Statistics

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Species	Samples	Raw reads number	Mapping rate	Markdup rate	Q30 reads number	TSS Enrichment	Peak number	Sample name	Number of sequences labeled as OCR in training set	Ratio of sequences labeled as OCR in training set	Number of sequences labeled as OCR in test set	Ratio of sequences labeled as OCR in test set	AUC	AUPRC
thaliana	Arabidopsis_stem_cell_rep3	151660948	0.9953	0.2564971306918113	42330835	13.9729520631985	30946	ATAC-seq, stem cells, rep3	139540	0.02725390625	249	0.0249399038461538	0.9451	0.732
thaliana	Arabidopsis_stem_cell_rep2	99733622	0.9951	0.20354040185164438	36838477	14.3957565872726	31004	ATAC-seq, stem cells, rep2	240981	0.0470666015625	436	0.0436698717948717	0.949	0.7398
thaliana	Arabidopsis_root_non_hair_cell_rep1	94079852	0.9949	0.10173266429033073	60213985	11.1915058986815	34494	ATAC-seq, root non-hair, rep1	344379	0.0672615234375	642	0.0643028846153846	0.9378	0.7252
thaliana	Arabidopsis_root_tip_rep1	47952800	0.9871	0.06039480489147662	29813691	5.31457229445005	17272	ATAC-seq, root tips, rep1	344701	0.0673244140625	653	0.0654046474358974	0.9515	0.5505
thaliana	Arabidopsis_stem_cell_rep1	84687814	0.9949	0.21809590574625057	27662167	14.5693552235733	29395	ATAC-seq, stem cells, rep1	356863	0.0696998046875	689	0.0690104166666666	0.9502	0.7357
thaliana	Arabidopsis_7days_leaf_rep1	45225502	0.9949	0.304	13461588	12.32	25571	ATAC-seq, leaf, 7 days, rep1	393580	0.07687109375	709	0.0710136217948717	0.9214	0.5419
thaliana	Arabidopsis_root_tip_rep2	121576490	0.9858	0.08497107458851624	73908585	3.97522221015346	10784	ATAC-seq, root tips, rep2	395322	0.077211328125	758	0.0759214743589743	0.9163	0.2883
thaliana	Arabidopsis_root_hair_cell_rep1	109162074	0.993	0.10396223783729136	68423950	9.6220323986828	33853	ATAC-seq, root hair, rep1	414566	0.080969921875	818	0.0819310897435897	0.9341	0.7047
thaliana	Arabidopsis_mesophyll_cell_rep1	112729514	0.9914	0.3276055150916378	12581426	15.3489272689879	21455	ATAC-seq, mesophyll cells, rep1	509807	0.0995716796875	1005	0.100661057692307	0.9499	0.6562
thaliana	Arabidopsis_mesophyll_cell_rep3	100129142	0.9927	0.2577787443739406	10905730	16.0988764044944	21512	ATAC-seq, mesophyll cells, rep3	546616	0.1067609375	1077	0.107872596153846	0.9493	0.646
thaliana	Arabidopsis_root_non_hair_cell_rep2	24296952	0.9936	0.05785511697105052	15406787	9.94380696723346	23224	ATAC-seq, root non-hair, rep2	557959	0.1089763671875	1078	0.107972756410256	0.9438	0.6593
thaliana	Arabidopsis_mesophyll_cell_rep2	99938318	0.9932	0.286012938500726	18268744	16.0974753280251	23916	ATAC-seq, mesophyll cells, rep2	544592	0.106365625	1087	0.108874198717948	0.9456	0.6785
thaliana	Arabidopsis_root_hair_cell_rep2	29171548	0.9938	0.06423431831591522	18573026	10.8796207745177	26433	ATAC-seq, root hair, rep2	570957	0.1115150390625	1120	0.112179487179487	0.9482	0.7039
thaliana	Arabidopsis_7days_leaf_rep2	149379644	0.7171	0.3	30345758	15.54	33398	ATAC-seq, leaf, 7 days, rep2	585868	0.11442734375	1127	0.112880608974358	0.9397	0.7118
distachyon	Bdistachyon_root_1	14543028	0.4715	0.0551	5170222	7.474429	26244	ATAC-seq, root, rep1	40093	0.0078306640625	98	0.00660021551724137	0.9571	0.2512
distachyon	Bdistachyon_young_leaf_2	10291646	0.9754	0.1146	7932579	8.145661	17113	ATAC-seq, young leaf, rep2	74266	0.014505078125	172	0.0115840517241379	0.9524	0.3772
distachyon	Bdistachyon_young_leaf_1	10870214	0.9604	0.1215	8569899	9.781782	23358	ATAC-seq, young leaf, rep1	112185	0.0219111328125	280	0.0188577586206896	0.9474	0.4259
distachyon	Bdistachyon_flower_2	24329952	0.9589	0.5249	8403967	14.74794	46148	ATAC-seq, flower, rep2	162902	0.031816796875	377	0.025390625	0.9598	0.5461
distachyon	Bdistachyon_root_2	45701156	0.5064	0.0649	17355034	6.974961	63702	ATAC-seq, root, rep2	180246	0.035204296875	426	0.0286907327586206	0.9551	0.4825
distachyon	Bdistachyon_flower_1	39572726	0.9536	0.5504	13233688	13.72844	52655	ATAC-seq, flower, rep1	215663	0.0421216796875	510	0.0343480603448275	0.9522	0.5589
distachyon	Bdistachyon_flag_leaf_2	63932496	0.9606	0.3272	37316076	13.09903	52939	ATAC-seq, flag leaf, rep2	439499	0.0858396484375	1071	0.0721309267241379	0.9384	0.5834
distachyon	Bdistachyon_panicle_1	116923382	0.9716	0.5741	39556921	15.73158	59336	ATAC-seq, young panicle, rep1	408596	0.07980390625	1104	0.074353448275862	0.9529	0.6807
distachyon	Bdistachyon_flag_leaf_1	94067702	0.9695	0.3964	49821067	13.45077	57838	ATAC-seq, flag leaf, rep1	452662	0.088410546875	1117	0.0752289870689655	0.9386	0.6084
sativa	ZS97_panicle_1	57620486	0.9742	0.3419	28421790	14.37703	67787	ATAC-seq, young panicle, rep1	34913	0.0068189453125	169	0.00846354166666666	0.9616	0.6601
sativa	MH63_flower_2c_1	85892532	0.9856	0.151	58461515	7.702464	93603	ATAC-seq, stamen & pistil, rep1	49527	0.0096732421875	131	0.00882273706896551	0.9746	0.4953
sativa	MH63_flower_2c_2	122252060	0.9853	0.2364	76147515	9.221702	96572	ATAC-seq, stamen & pistil, rep2	68509	0.0133806640625	181	0.0121901939655172	0.981	0.5626
sativa	ZS97_panicle_5	65002916	0.9873	0.3547	29150864	10.7186	67179	ATAC-seq, young panicle, rep5	140295	0.0274013671875	482	0.0160924145299145	0.955	0.6319
sativa	ZS97_panicle_4	57332524	0.9902	0.2823	28807075	10.30729	67392	ATAC-seq, young panicle, rep4	148634	0.029030078125	537	0.0179286858974358	0.959	0.6525
sativa	MH63_flag_leaf_2	64745662	0.9861	0.2291	30658582	6.834124	59063	ATAC-seq, flag leaf, rep2	119482	0.023336328125	295	0.0198679956896551	0.9508	0.5332
sativa	ZS97_young_leaf_1	174433758	0.9755	0.5716	45901408	17.78239	62667	ATAC-seq, young leaf, rep1	234188	0.04573984375	842	0.0281116452991453	0.9465	0.5805
sativa	ZS97_panicle_2	24321634	0.9875	0.3067	11047821	13.95428	51875	ATAC-seq, young panicle, rep2	120640	0.0235625	583	0.0291967147435897	0.9738	0.6329
sativa	MH63_panicle_2	33309586	0.9863	0.3309	14732470	15.59018	54837	ATAC-seq, young panicle, rep2	167176	0.0326515625	435	0.029296875	0.9686	0.6312
sativa	MH63_young_leaf_2	70109302	0.9854	0.4114	28029716	14.21247	52855	ATAC-seq, young leaf, rep2	169796	0.03316328125	445	0.0299703663793103	0.952	0.5959
sativa	MH63_panicle_1	58832756	0.9843	0.4198	24409468	14.83604	66717	ATAC-seq, young panicle, rep1	204168	0.0398765625	506	0.0340786637931034	0.9636	0.6216
sativa	MH63_panicle_3	51162146	0.9863	0.3469	22157517	15.72402	62842	ATAC-seq, young panicle, rep3	201314	0.039319140625	515	0.0346848060344827	0.9708	0.667
sativa	MH63_panicle_5	46253072	0.9874	0.2876	25483264	11.9454	73604	ATAC-seq, young panicle, rep5	236853	0.0462603515625	581	0.039129849137931	0.9588	0.6203
sativa	MH63_panicle_4	55158396	0.9752	0.3268	26097080	11.75267	74025	ATAC-seq, young panicle, rep4	234237	0.0457494140625	584	0.0393318965517241	0.9573	0.6266
sativa	MH63_young_leaf_1	138938116	0.9864	0.4966	44734544	13.01291	65991	ATAC-seq, young leaf, rep1	229037	0.0447337890625	595	0.0400727370689655	0.9457	0.607
sativa	MH63_root_2	68284992	0.987	0.4127	32567024	14.21247	71764	ATAC-seq, root, rep2	253463	0.0495044921875	633	0.0426320043103448	0.9563	0.6308
sativa	ZS97_young_leaf_2	28235594	0.9843	0.3616	11787053	17.22278	35795	ATAC-seq, young leaf, rep2	356413	0.0696119140625	1297	0.0433026175213675	0.9603	0.5353
sativa	ZS97_panicle_3	36435606	0.9844	0.3379	15282506	13.70468	55220	ATAC-seq, young panicle, rep3	182557	0.0356556640625	890	0.0445713141025641	0.9646	0.6259
sativa	MH63_flag_leaf_1	126342026	0.987	0.273	68545456	9.103924	85130	ATAC-seq, flag leaf, rep1	292602	0.057148828125	744	0.0501077586206896	0.9345	0.5805
sativa	ZS97_root_1	166991452	0.9781	0.5518	54000690	15.53395	79269	ATAC-seq, root, rep1	407748	0.07963828125	1567	0.0523170405982906	0.9495	0.62
sativa	ZS97_root_2	74643946	0.985	0.4001	34476273	15.76322	74959	ATAC-seq, root, rep2	426907	0.0833802734375	1704	0.0568910256410256	0.9504	0.5768
sativa	MH63_lemma_1	74239198	0.9867	0.2213	48732306	10.19429	93847	ATAC-seq, lemma & palea, rep1	330188	0.06448984375	847	0.0570447198275862	0.9458	0.6285
sativa	MH63_lemma_2	85247604	0.9856	0.1906	56875872	9.809293	100375	ATAC-seq, lemma & palea, rep2	336402	0.065703515625	856	0.0576508620689655	0.9478	0.6283
sativa	MH63_root_1	223711752	0.9769	0.5957	67402069	15.61443	83825	ATAC-seq, root, rep1	343090	0.067009765625	875	0.0589304956896551	0.9535	0.6631
sativa	ZS97_flag_leaf_2	163670488	0.9661	0.6583	39551245	14.21574	77310	ATAC-seq, flag leaf, rep2	270937	0.0529173828125	1354	0.0678084935897435	0.9468	0.5868
sativa	ZS97_flag_leaf_1	92533216	0.9825	0.305	46956080	14.77318	75516	ATAC-seq, flag leaf, rep1	324916	0.06346015625	1592	0.0797275641025641	0.95	0.5917
sativa	ZS97_flower_1	101666618	0.9832	0.2821	61616639	12.83608	110778	ATAC-seq, stamen & pistil, rep1	449357	0.0877650390625	2165	0.108423477564102	0.9383	0.6421
sativa	ZS97_flower_2	98606866	0.9858	0.2658	61262472	13.17765	103872	ATAC-seq, stamen & pistil, rep2	462941	0.0904181640625	2183	0.109324919871794	0.9382	0.6344
sativa	ZS97_lemma_2	38347774	0.9865	0.1542	26758090	12.02033	73452	ATAC-seq, lemma & palea, rep2	494763	0.0966333984375	2340	0.1171875	0.9563	0.6211
sativa	ZS97_lemma_1	37055650	0.9861	0.1391	26193428	11.66184	85427	ATAC-seq, lemma & palea, rep1	601667	0.1175130859375	2838	0.142127403846153	0.9599	0.6366
bicolor	Sorghum_panicle_bottom_2	182882314	0.987	0.5751	53041704	8.012612	90294	ATAC-seq, bottom part of panicle, rep2	14006	0.0021884375	186	0.00232872596153846	0.966	0.6159
bicolor	Sorghum_panicle_top_1	37071094	0.8527	0.2408	16239681	8.174673	50825	ATAC-seq, upper part of panicle, rep1	14920	0.00233125	202	0.00252904647435897	0.9778	0.5337
bicolor	Sorghum_root_2c_1	63639878	0.8728	0.4883	10827038	10.8986	47897	ATAC-seq, root, rep1	37103	0.00579734375	463	0.00579677483974359	0.9907	0.5791
bicolor	Sorghum_lemma_2	169146264	0.9961	0.1574	114443589	7.666836	116149	ATAC-seq, lemma & palea, rep2	44558	0.0069621875	588	0.00736177884615384	0.972	0.6932
bicolor	Sorghum_young_leaf_2c_2	8595822	0.9875	0.1669	5295135	13.03469	32824	ATAC-seq, young leaf, rep2	47084	0.007356875	653	0.00817558092948718	0.9856	0.5384
bicolor	Sorghum_young_leaf_2c_1	112887230	0.9612	0.5199	28765923	15.35077	60239	ATAC-seq, young leaf, rep1	46878	0.0073246875	654	0.00818810096153846	0.9841	0.6162
bicolor	Sorghum_panicle_bottom_1	84595194	0.982	0.3542	38476674	7.692585	80589	ATAC-seq, bottom part of panicle, rep1	51301	0.00801578125	672	0.00841346153846153	0.9691	0.5645
bicolor	Sorghum_panicle_top_2	39628252	0.99	0.3257	19320478	8.858769	57830	ATAC-seq, upper part of panicle, rep2	54562	0.0085253125	690	0.00863882211538461	0.9776	0.5835
bicolor	Sorghum_flower_1	203189918	0.9957	0.1605	133533451	7.667173	143324	ATAC-seq, stamen & pistil, rep1	64437	0.01006828125	816	0.0102163461538461	0.9721	0.7123
bicolor	Sorghum_flower_2	245343676	0.9966	0.1495	160133173	7.320194	160069	ATAC-seq, stamen & pistil, rep2	65513	0.01023640625	838	0.0104917868589743	0.9714	0.7187
bicolor	Sorghum_flag_leaf_1	130334958	0.9927	0.4356	52334264	11.24004	55991	ATAC-seq, flag leaf, rep1	68154	0.0106490625	881	0.0110301482371794	0.977	0.613
bicolor	Sorghum_flag_leaf_2	144450460	0.9921	0.412	60112869	10.82261	69930	ATAC-seq, flag leaf, rep2	72738	0.0113653125	926	0.0115935496794871	0.9753	0.5691
bicolor	Sorghum_lemma_1	95665980	0.9952	0.1691	65442690	8.990719	105032	ATAC-seq, lemma & palea, rep1	75782	0.0118409375	990	0.0123948317307692	0.9745	0.6452
bicolor	Sorghum_root_2c_2	397222962	0.9907	0.7644	60516298	12.3933	79326	ATAC-seq, root, rep2	97185	0.01518515625	1236	0.0154747596153846	0.9671	0.5624
italica	Sitalica_panicle_1	177674200	0.9883	0.2021	126227388	6.391608	102264	ATAC-seq, young panicle, rep1	48566	0.009485546875	157	0.00524172008547008	0.9489	0.7689
italica	Sitalica_young_leaf_2c_1	70067138	0.9694	0.4212	29659320	8.260901	69107	ATAC-seq, young leaf, rep1	65424	0.012778125	224	0.00747863247863247	0.9734	0.6251
italica	Sitalica_flower_1	131086536	0.9924	0.23	91809521	7.196102	96573	ATAC-seq, flower, rep1	91008	0.017775	318	0.0106169871794871	0.9497	0.7372
italica	Sitalica_root_2c_1	25735750	0.8962	0.4955	7709618	7.4828	30919	ATAC-seq, root, rep1	102140	0.01994921875	339	0.0113181089743589	0.9806	0.4096
italica	Sitalica_young_leaf_2c_2	57397792	0.982	0.5489	19638669	9.739894	41305	ATAC-seq, young leaf, rep2	72681	0.01135640625	956	0.0119691506410256	0.9611	0.6128
italica	Sitalica_flower_2	138357024	0.992	0.2077	99270572	7.344447	90325	ATAC-seq, flower, rep2	121054	0.023643359375	443	0.0147903311965811	0.9492	0.7337
italica	Sitalica_flag_leaf_1	141996604	0.9915	0.2786	85924479	6.056993	65882	ATAC-seq, flag leaf, rep1	162685	0.0317744140625	615	0.0205328525641025	0.9475	0.6707
italica	Sitalica_panicle_2	150142666	0.9871	0.2297	100733619	6.378559	94699	ATAC-seq, young panicle, rep2	192586	0.037614453125	742	0.02477297008547	0.9515	0.7491
italica	Sitalica_flag_leaf_2	100706220	0.9926	0.2437	63693010	6.293736	58992	ATAC-seq, flag leaf, rep2	224032	0.04375625	856	0.0285790598290598	0.9491	0.639
mays	Zmays_ear_big_top_1	96724598	0.9955	0.3522	40851048	10.56143	78382	ATAC-seq, upper part of ~1cm ear, rep1	39169	0.00612015625	528	0.00661057692307692	0.9802	0.5315
mays	Zmays_ear_big_bottom_2	96513184	0.9939	0.3728	38466973	11.24552	80019	ATAC-seq, bottom part of ~1cm ear, rep2	53425	0.00834765625	696	0.0087139423076923	0.9828	0.5456
mays	Zmays_ear_big_bottom_1	92636560	0.996	0.3325	40570461	10.98669	78983	ATAC-seq, bottom part of ~1cm ear, rep1	61812	0.009658125	823	0.0103039863782051	0.9807	0.5326
mays	Zmays_ear_big_top_2	101609846	0.9939	0.3889	38784430	10.24869	75514	ATAC-seq, upper part of ~1cm ear, rep2	87961	0.01374390625	1101	0.0137845552884615	0.9826	0.543
mays	Zmays_young_leaf_2c_3	126330162	0.9727	0.3883	57581514	13.04916	83836	ATAC-seq, young leaf, rep3	101406	0.019805859375	258	0.0173760775862068	0.9814	0.5561
mays	Zmays_root_2c_2	158419674	0.432	0.1117	24442269	14.79416	115869	ATAC-seq, root, rep2	111460	0.02176953125	310	0.0208782327586206	0.9862	0.4249
mays	Zmays_root_2c_3	159349756	0.9975	0.3186	80469075	11.95208	90430	ATAC-seq, root, rep3	158819	0.0310193359375	458	0.0308459051724137	0.9813	0.5718
mays	Zmays_young_leaf_2c_1	141333474	0.9523	0.3596	41587718	16.61737	90227	ATAC-seq, young leaf, rep1	242864	0.047434375	616	0.0414870689655172	0.9866	0.5354
mays	Zmays_root_2c_1	226773650	0.5024	0.1413	42431275	15.08277	129812	ATAC-seq, root, rep1	226605	0.0442587890625	620	0.0417564655172413	0.9847	0.4657
mays	Zmays_young_leaf_2c_2	103976508	0.9484	0.3064	30621551	15.40104	74194	ATAC-seq, young leaf, rep2	234570	0.045814453125	621	0.0418238146551724	0.988	0.5087
mays	Zmays_flower_1	105904206	0.9923	0.2676	53849927	5.366069	24274	ATAC-seq, young tassel spikelet, rep1	250943	0.0490123046875	624	0.0420258620689655	0.9827	0.2921
mays	Zmays_tassel_bottom_1	94275220	0.9963	0.3106	42417005	8.869163	56382	ATAC-seq, bottom part of ~1cm tassel, rep1	243257	0.0475111328125	637	0.0429014008620689	0.9835	0.504
mays	Zmays_flower_2	112607990	0.9975	0.289	55191321	5.52845	25693	ATAC-seq, young tassel spikelet, rep2	264358	0.051632421875	655	0.0441136853448275	0.9888	0.3178
mays	Zmays_ear_small_1	91987754	0.9944	0.3956	36094115	11.04664	77335	ATAC-seq, ~5mm ear, rep1	261472	0.05106875	683	0.0459994612068965	0.98	0.5302
mays	Zmays_tassel_bottom_2	86178832	0.9955	0.3613	35351943	9.707942	61634	ATAC-seq, bottom part of ~1cm tassel, rep2	254837	0.0497728515625	689	0.0464035560344827	0.9826	0.5025
mays	Zmays_ear_small_2	96011440	0.994	0.325	42612007	11.05327	87925	ATAC-seq, ~5mm ear, rep2	276548	0.05401328125	723	0.0486934267241379	0.9815	0.5571
mays	Zmays_tassel_top_1	180483274	0.9963	0.413	71579847	9.0775	68782	ATAC-seq, upper part of ~1cm tassel, rep1	286296	0.0559171875	757	0.0509832974137931	0.9823	0.5379
mays	Zmays_flag_leaf_2	100750444	0.9951	0.4233	39828337	9.488862	60508	ATAC-seq, flag leaf, rep2	386108	0.07541171875	1014	0.0682920258620689	0.9823	0.4529
mays	Zmays_flag_leaf_1	95249354	0.9969	0.3709	43570772	8.550059	51086	ATAC-seq, flag leaf, rep1	389894	0.076151171875	1025	0.0690328663793103	0.9823	0.4435